PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g04970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 241aa    MW: 27029.7 Da    PI: 4.7555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g04970genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1886135355
        AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++GVr ++ +g+++AeIrd    + k  r++lg+f+taeeAa a+++a+ +l+g
  Tp1g04970  86 HRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 135
                8*******.**********32..2.24***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-2985144IPR001471AP2/ERF domain
SMARTSM003807.6E-3785149IPR001471AP2/ERF domain
PROSITE profilePS5103222.52485143IPR001471AP2/ERF domain
PfamPF008471.0E-1286135IPR001471AP2/ERF domain
CDDcd000183.80E-2986144No hitNo description
SuperFamilySSF541714.51E-2286145IPR016177DNA-binding domain
PRINTSPR003672.6E-108697IPR001471AP2/ERF domain
PRINTSPR003672.6E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009753Biological Processresponse to jasmonic acid
GO:0009861Biological Processjasmonic acid and ethylene-dependent systemic resistance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MESESSFFSE NPSQEFSPEN SSSTTSWSSQ ESFLWEETFL HQSFDQPFLS FSPSSYYSDD  60
FFTFGSAVIQ EEEATVAAKE EEERSHRGVR KRPWGKYAAE IRDSTRKGIR VWLGTFDTAE  120
EAALAYDQAA FALKGDLAVL NFPVEVVKES LRNIENVNLN DGESPVIALK RKHSMRNQPR  180
GKKKSSPSSS SSSSYSSSSS STLSSRSRKQ SLVMKQESNS TLVVLEDLGA EYLEELMRLC  240
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2584146163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00023PBMTransfer from AT1G06160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0110011e-171BT011001.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBankBT0149581e-171BT014958.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBankCP0026841e-171CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF9P141e-171AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118552.11e-116PREDICTED: ethylene-responsive transcription factor ERF094-like
RefseqXP_013716403.11e-116PREDICTED: ethylene-responsive transcription factor ERF094-like
SwissprotQ9LND13e-92ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBLA0A078EZ231e-116A0A078EZ23_BRANA; BnaA09g50010D protein
TrEMBLM4EUF11e-116M4EUF1_BRARP; Uncharacterized protein
STRINGBra032433.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.12e-72octadecanoid-responsive Arabidopsis AP2/ERF 59